cosmo - Submission Form

cosmo - Constrained search for motifs in DNA sequences

Version 1.0.10

Data Submission Form

Use this form to submit DNA sequences to cosmo. cosmo will search your sequences for similarities among them and produce a description (motif) of the pattern it discovers. You may target the search by specifying a set of constraints that this motif must satisfy. Your results will be posted on a temporary web page. You may give your email address to receive a confirmation when the search has been completed.

[Optional] Your e-mail address:

[Optional] Description of your sequences:

Please enter the sequences which you believe share a common motif. cosmo supports a large number of sequence formats.

Enter the name of a file containing the sequences here:
or the actual sequences here (sample sequences):

Search given strand only

[Optional] Please enter a definition of the constraints you want the discovered motif to satisfy:

Enter the name of a file defining the constraints here:
or the actual constraint definitions here (sample constraints):

Add unconstrained case to given constraints

How do you think the occurrences of the motif may be distributed among the sequences?

	One per sequence
	Zero or one per sequence
	Any number of repetitions

[Optional]cosmo will find the optimum number of sites for the motif within the limits you specify here:

	Minimum number of sites (>=2)
	Maximum number of sites (<=300)

cosmo will find the optimum width of the motif within the limits you specify here:

	Minimum width (>=2)
	Maximum width (<=30)

For an advanced search with more options click here.

More information about cosmo is available here.

Please send comments and questions to: bembom [at] berkeley.edu